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Name
Description
Type
Language
Last Update Date
License
Author Type
Area (Users)
Area (Workspace)
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FDA Jumpstart Scripts

Clinical study evaluations scripts used by the FDA in their JumpStart tool has been developed based on SDTM standard. The FDA contributed the JumpStart SAS scripts so these are available on the PhUSE repository for use.
Scripts
SAS
2016-03-11
MIT
individual
ANALYST
Outputs
medium

RPact

The R package RPACT is a statistical program module, characterized as a comprehensive, validated software R package, that enables the simulation and analysis of parallel group designs with continuous, binary, and survival endpoint. RPACT can be downloaded per CRAN and will be available as open-source under LGPL3.
Tool
R
2020-09-25
GPL-3
company
STAT
Statistics
large

Visual Define-XML Editor

A cross-platform desktop application which allows to edit and review Define-XML files in a convenient and efficient way. It fully supports CDISC Define-XML v2.0 and ARM 1.0 standards.
Tool
JavaScript, Node.js
2020-01-16
AGPL-3.0
individual
DM, ANALYST
Define
large

Pinnacle21 Community Edition

This tool supports various CDISC processes including the validation and creation of the define.xml. It's broadly used in the pharmaceutical industry and currently required by the Japanese authority PMDA.
Tool
Java, JavaScript
2019-08-09
Pinnacle 21 Open Source Software License
company
DM, ANALYST
Define, CDISC
large

TidyCDISC

TidyCDISC is an R-Shiny app. The purpose of tidyCDISC is to easily create custom tables and figures from ADaM datasets.
Tool
R
2020-11-09
AGPL
company
ANALYST
Programming, Outputs
medium

SASUnit

SASUnit is a unit testing framework for SAS(TM)-programs. It can be used for the development, execution and automatic documentation of tests for SAS programs. SASUnit is written purely on the basis of SAS macros and a few shell commands.
Tool
SAS
2020-10-08
GPLv3
company
DM, ANALYST, PROG
Programming
medium

Douhau Data Studio

Douhau Data Studio is a data browser desktop application for CDISC SDTM, and support both SAS XPORT v5 and CDISC Dataset-XML file format.
Tool
R, TypeScript
2021-01-17
MIT
individual
DM, ANALYST
Visualization
large

Spectre (Roland's SAS® Macros)

A complete clinical reporting engine is provided as Sprectre. It's a comprehensive macro framework. Additionally 244 useful utility macros are available.
Scripts
SAS
2015-06-17
Unlicense
individual
ANALYST
Outputs
large

SAS Macros by Scott Bass

Scott Bass has built up a (semi) large collection of utility macros over the years with 73 macros currently. These are put up on GitHub to make them available for anyone. Almost all are utility in nature, and not tied to any particular project.
Scripts
SAS
2020-10-22
Unlicense
individual
DM, ANALYST, PROG
Programming
medium

SASjs Core Macros

Much quality. Many standards. The Macro Core library exists to save time and development effort! Herein ye shall find a veritable host of production quality SAS macros. These are a mix of tools, utilities, functions and code generators that are useful in the context of Application Development on the SAS platform. Contributions are welcomed.
Scripts
SAS
2021-01-31
MIT
individual
DM, ANALYST, PROG
Programming
medium

Reindeer - Result Render Tool

Reindeer is a VBA tool to render SAS results in LISTING, RTF, TAGSETS.RTF and Figures into a Word template file. PDF can be generated as well. This easy to use and very intuitive open source tool is sponsored by ClinStat.
Tool
VBA, SAS
2021-01-22
MIT
company
PROG, ANALYST
Outputs
medium

Web Codebook

The web codebook is a JavaScript library that provides a concise summary of every variable in a dataset. The codebook includes interactive features such as real-time filters and requires minimal user configuration. When the page loads, the user sees a "codebook" providing a graphical data summary for each data column. It can be started trough R as well.
Tool
JavaScript, R
2020-02-19
MIT
company
PROG, ANALYST, DM
Visualization
medium

PhUSE White Paper Central Tendencies Scripts

PhUSE has developed analysis and display white papers covering many aspects of clinical study evaluations. Additionally people developed corresponding R and SAS scripts which create the white paper outputs and graphics. These scripts are made publicy available in the PhUSE script repository.
Scripts
R, SAS
2019-02-25
MIT
individual
ANALYST
Outputs
medium

StatTag

StatTag is a free plug-in for conducting reproducible research and creating dynamic documents using Microsoft Word with the R, Stata and SAS statistical packages.
Tool
Word, Stata, R, SAS
2020-08-05
MIT
individual
ANALYST, STAT, PROG
Outputs
medium

RTables

The RTables R package is a prototype to create and display complex tables with R. The cells in an RTable may contain any high-dimensional data structure which can then be displayed with cell-specific formatting instructions. Currently, RTables can be outputted in ascii and html.
Tool
R
2020-08-20
Apache License V2
company
ANALYST
Outputs
medium

ggcharts

The ggcharts R package is a toolkit to easily generate visualizations which would otherwise need quite some lines of data manipluations and ggplot2 usage.
Tool
R
2020-10-12
MIT
individual
ANALYST, PROG
Outputs
medium

Chris's SAS Macros

This is the SAS Macro collection from Chris Swenson who published 83 supporting SAS macros which can be used for various purposes.
Tool
SAS
2019-12-14
LGPL
individual
ANALYST, PROG, STAT
Programming
medium

R for Clinical Trials - Link List

A huge tool collection list for R exists and is maintained by Ed Zhang and Harry G. Zhang.
Link
R
2019-02-20
n.a.
individual
DM, ANALYST, PROG
Programming
medium

R4DSXML

R4DSXML is R package for import CDISC Dataset-XML and Define-XML as R data frame. The tool support CDISC Dataset-XML 1.0, Define-XML 2.0 and Analysis Results Metadata 1.0.
Tool
R
2020-09-21
LGPL3
individual
ANALYST, DM
Define
small

Smart Submission Dataset Viewer

Smart Submission Dataset Viewer is a Java-based viewer for CDISC submission files in the new Dataset-XML format. The newer versions also allow to generate Dataset-XML files starting from SAS-XPT files on the fly.
Tool
Java
2020-09-29
MIT
individual
ANALYST, DM
Define
medium

DefineXML SAS XMLMAP

The CDISC-Define-XML-SAS-XMLMAP provides two mapping files which can be used in SAS to map ODM and define.xml in version 2.0.0 to SAS dataets. Furthermore a macro is provided to create define-view like datasets in SAS.
Tool
SAS
2020-10-28
MIT
individual
ANALYST, DM
Define
small

Data Visualization - SAS Blog

SAS has a blog post where various topics are discussed and examples are provided. The 'Data Visualization' blog contains a lot of examples including source code on various graphic types.
Scripts
SAS
2020-01-20
company
DM, ANALYST, STAT, PROG
Visualization
small

RhoInc Plots

Multiple Plot SAS Macros are made available by RhoInc employees in different GitHub subpages. There is a violin plot, sankey barchart, bee swarm and other related macros available.
Scripts
SAS
2019-08-08
MIT
company
ANALYST
Visualization
small

safetyGraphics

SafetyGraphics - Clinical Trial Safety Graphics with R. This package provides a framework for evaluation of clinical trial safety in R. It includes several safety-focused visualizations to empower clinical data monitoring.
Tool
JavaScript, R
2020-10-23
MIT
company
PROG, ANALYST
Visualization
medium

Safety Histogram

Safety Histogram is a JavaScript library built with Webcharts (1, 2) that creates an interactive histogram plotting the distribution of lab measures, vital signs, and other measures related to safety in clinical trials.
Tool
JavaScript
2020-01-20
MIT
company
PROG, ANALYST
Visualization
medium

Adverse Event Explorer

The AE Explorer is a JavaScript library that allows users to dynamically query adverse event (AE) data in real time. The default view is a single-screen display of AEs grouped by the MedDRA System Organ Class. Dot plots portray the incidence in the different treatment groups.
Tool
JavaScript
2020-10-21
MIT
company
PROG, ANALYST
Visualization
medium

Clinical Timelines

Clinical Timelines is a JavaScript library that visualizes events over time via a faceted, interactive timeline chart. While initially designed for use in clinical trial research, the library works with any longitudinal data of one record per event.
Tool
JavaScript
2019-07-12
MIT
company
PROG, ANALYST, DM
Visualization
medium

CRF Heat Map

The CRF Heat Map visualizes the level of completeness of a clinical database by aggregating case report form (CRF) characteristics, such as the rate of CRFs entered, frozen, and locked and the number of unresolved queries.
Tool
JavaScript
2019-11-22
MIT
company
PROG, DM
Visualization
medium

Query Overview

Query Overview is a JavaScript library built using Webcharts (1, 2) that creates an interactive bar chart showing the distribution of queries that have been issued regarding data collected in a clinical trial.
Tool
JavaScript
2019-07-30
MIT
company
PROG, DM
Visualization
medium

Safety Results Over Time

Safety Results Over Time is a JavaScript library built using Webcharts (1, 2) that allows users to view summaries of clinical outcomes such as lab results and vital signs over time. A typical chart created with safety results over time.
Tool
JavaScript
2019-07-12
MIT
company
PROG, ANALYST
Visualization
medium

Adverse Event Timelines

AE-timelines is a JavaScript library built using Webcharts (1, 2) that creates an adverse event timeline for each participant in a clinical trial. Clicking on the y-axis tick labels also opens an adverse event-level participant view.
Tool
JavaScript
2019-08-19
MIT
company
PROG, ANALYST
Visualization
medium

Population Explorer

The Population Explorer is a simple JavaScript library that facilitates the real-time exploration of data sets using an intuitive user interface. The tool was designed to empower researchers to explore their medical research data in real time.
Tool
JavaScript
2020-02-03
MIT
company
PROG, ANALYST, DM
Visualization
medium

SMILE - Smart SAS Macros

This Smart SAS Macros - an Intuitive Library Extension contains small makros for example to download files from URLs or creating flat PDF navigation panes for ODS PDF.
Scripts
SAS
2021-01-22
MIT
company
PROG, ANALYST
Programming
small

Going Translational with Linked Data

In this project, formerly known as Clinical Trial Data to RDF, many scripts and macros are available to transform clinical trial data into linked data triples. There are also related scripts like visualization of triples and scripts (R and SAS) to triplify MedDRA.
Scripts
R, RDF, SAS
2020-04-11
MIT
individual
PROG
Programming
small

PhUSE White Paper Utilities

24 utility macros mainly for testing and validation has been developed by a PhUSE Working Group to perform qualifications. These utilities are made available in the PhUSE Script Repository.
Scripts
SAS
2017-03-21
MIT
individual
PROG
Programming
small

PhUSE Contributed Scripts & Macros

There are various scripts and macros available contributed to the PhUSE repository apart from those listed here as well. These might come from PhUSE working groups, individuals or presenters. Some are documented as PhUSE papers.
Scripts
R, SAS, Other
2019-07-20
MIT
individual
small

Others - Single Scripts & Macros

There are various scripts and macros available at single locations, these can be checked out under the 'programs' view.
Scripts
SAS
2020-01-22
individual
small
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